Evolving small spiking neural networks to work as state machines for temporal pattern recognition

Peer reviewe

Evolving spiking neural networks for temporal pattern recognition in the presence of noise

Creative Commons - Attribution-NonCommercial-NoDerivs 3.0 United StatesNervous systems of biological organisms use temporal patterns of spikes to encode sensory input, but the mechanisms that underlie the recognition of such patterns are unclear. In the present work, we explore how networks of spiking neurons can be evolved to recognize temporal input patterns without being able to adjust signal conduction delays. We evolve the networks with GReaNs, an artificial life platform that encodes the topology of the network (and the weights of connections) in a fashion inspired by the encoding of gene regulatory networks in biological genomes. The number of computational nodes or connections is not limited in GReaNs, but here we limit the size of the networks to analyze the functioning of the networks and the effect of network size on the evolvability of robustness to noise. Our results show that even very small networks of spiking neurons can perform temporal pattern recognition in the presence of input noiseFinal Published versio

Evolution of Spiking Neural Networks for Temporal Pattern Recognition and Animat Control

I extended an artificial life platform called GReaNs (the name stands for Gene Regulatory evolving artificial Networks) to explore the evolutionary abilities of biologically inspired Spiking Neural Network (SNN) model. The encoding of SNNs in GReaNs was inspired by the encoding of gene regulatory networks. As proof-of-principle, I used GReaNs to evolve SNNs to obtain a network with an output neuron which generates a predefined spike train in response to a specific input. Temporal pattern recognition was one of the main tasks during my studies. It is widely believed that nervous systems of biological organisms use temporal patterns of inputs to encode information. The learning technique used for temporal pattern recognition is not clear yet. I studied the ability to evolve spiking networks with different numbers of interneurons in the absence and the presence of noise to recognize predefined temporal patterns of inputs. Results showed, that in the presence of noise, it was possible to evolve successful networks. However, the networks with only one interneuron were not robust to noise. The foraging behaviour of many small animals depends mainly on their olfactory system. I explored whether it was possible to evolve SNNs able to control an agent to find food particles on 2-dimensional maps. Using ring rate encoding to encode the sensory information in the olfactory input neurons, I managed to obtain SNNs able to control an agent that could detect the position of the food particles and move toward it. Furthermore, I did unsuccessful attempts to use GReaNs to evolve an SNN able to control an agent able to collect sound sources from one type out of several sound types. Each sound type is represented as a pattern of different frequencies. In order to use the computational power of neuromorphic hardware, I integrated GReaNs with the SpiNNaker hardware system. Only the simulation part was carried out using SpiNNaker, but the rest steps of the genetic algorithm were done with GReaNs

Characterization of flame propagation and burning rates of various mixtures of biogas and nitrous oxide

Biogas is a potential alternative energy source with low environmental impact. However, the practical applications of biogas are relatively limited due to the existence of carbon dioxide (CO2) which acts as a diluent that decreases the calorific value and the burning rate of biogas. Nitrous oxide (N2O) is known to be a powerful oxidizing agent for propulsion applications which can enhance the combustion rate of biogas, however, there is a lack of studies that investigate the fundamental characteristics of biogas-N2O combustion. The aim of this study is to gain insight into the fundamental combustion characteristics of biogas-N2O mixtures in terms of laminar burning velocity and flame stability. In the present work, spherically expanding flames following central ignition at constant volume combustion chamber (CVCC) were employed to investigate laminar burning velocity (LBV), hydrodynamic instability, and diffusive-thermal instability of biogas-N2O mixtures at wide equivalence ratio;?, from 0.6 to 1.4, at 303K and atmospheric pressure. Two mechanisms were used in CHEMKIN-PRO 17 software in order to estimate the predicted combustion characteristics of biogas-N2O mixtures. The results indicate that the decline in LBVs was prominent in the fuel-rich mixtures than in the fuel-lean mixtures with CO2 dilution. It is found that the influence of curvature on the flame front is weakened at the fuel lean-to-stoichiometric mixture due to the decrease in the flame thickness. Therefore, flame instability tends to increase at the lean-to-stoichiometric region. The increase in CO2 in biogas by 10%, increases the Lewis number (Le) value by 3.6% to 4.6%. The diffusive-thermal instability was dominant for all biogas-N2O mixtures, as Le was less than unity throughout the entire equivalence ratio range. The thermal reaction of N2O decomposition is the most significant reaction in biogas-N2O combustion at lean mixtures of ? = 0.6 and ? = 0.8. The LBVs of biogas-N2O mixture revealed a considerable enhancement at the lean equivalence ratio of 0.8 compared to the other biogas-air mixtures with H2 addition. The effect of nitrous oxide as an oxidizer on biogas detonation characteristics is studied numerically using Chemical Equilibrium Applications (CEA) and compared with other oxidizers. Mixtures with N2O oxidant revealed 32% and 16% higher detonation pressure and detonation Mach number, respectively, at ? = 0.6, compared to that of mixtures with pure oxygen oxidant. Overall, employing N2O oxidant has enhanced the fundamental combustion characteristics of biogas significantly, which may lead to the use of biogas as a clean fuel in commercial applications that demand high combustion rates, such as power generation and aerospace

Pyloromyotomy for infantile hypertrophic pyloric stenosis using a modification of the Tan and Bianchi circumumbilical approach

Background/purpose Different approaches have been advocated for pyloromyotomy.  Since the introduction of umbilical pyloromyotomy, a number of studies have shown that it is as safe as the traditional right upper quadrant approach with superior  cosmetic results. The aim of this study was to assess the feasibility and the safety  of pyloromyotomy for infantile hyprtrophic pyloric stenosis using a modification of the Tan–Bianchi approach.Patients and methods Over a period of 2 years, 20 infants with infantile  hypertrophic pyloric stenosis have been clinically evaluated. The umbilical approach was modified so that a transverse muscle cutting incision rather than a longitudinal midline linea alba incision was performed.Results The total number of cases included in this study was 20 [16 male (80%)  and four female (20%) patients]. Their ages ranged from 23 to 60 days (average  42.6 ±13.54 days), and their weights ranged from 2700 to 4000 g (mean 3605± 437.4 g). Pyloromyotomy was performed safely with negligible blood loss. Four cases of serosal tear occurred, with an incidence of 20%. None of our cases showed significant complications. The mean operating time was 52.5 ± 5.073 min. The postoperative hospital stay ranged from 24 to 72 h. The postoperative course was uneventful in all patients, and, on follow-up, the circumumbilical incision left an almost undetectable scar.Conclusion Pyloromyotomy for infantile hypertrophic pyloric stenosis using the modified Tan and Bianchi technique is feasible and safe, having an accepted operative time, early initiation of postoperative feeding, and short hospital stay. This modification combines the advantage of circumumbilical incision with its better cosmetic results and right transverse upper abdominal approach with its easy and feasible access to the pyloric mass.Keywords: operative intervention, pyloric stenosis, Tan–Bianchi approac

PHIPS-HALO: The airborne Particle Habit Imaging and Polar Scattering probe-Part 1: Design and operation

This is an Open Access article distributed under the terms ofthe Creative Commons Attribution 3.0 License https://creativecommons.org/licenses/by/3.0/The number and shape of ice crystals present in mixed-phase and ice clouds influence the radiation properties, precipitation occurrence and lifetime of these clouds. Since clouds play a major role in the climate system, influencing the energy budget by scattering sunlight and absorbing heat radiation from the earth, it is necessary to investigate the optical and microphysical properties of cloud particles particularly in situ. The relationship between the microphysics and the single scattering properties of cloud particles is usually obtained by modelling the optical scattering properties from in situ measurements of ice crystal size distributions. The measured size distribution and the assumed particle shape might be erroneous in case of non-spherical ice particles. There is a demand to obtain both information correspondently and simultaneously for individual cloud particles in their natural environment. For evaluating the average scattering phase function as a function of ice particle habit and crystal complexity, in situ measurements are required. To this end we have developed a novel airborne optical sensor (PHIPS-HALO) to measure the optical properties and the corresponding microphysical parameters of individual cloud particles simultaneously. PHIPS-HALO has been tested in the AIDA cloud simulation chamber and deployed in mountain stations as well as research aircraft (HALO and Polar 6). It is a successive version of the laboratory prototype instrument PHIPS-AIDA. In this paper we present the detailed design of PHIPS-HALO, including the detection mechanism, optical design, mechanical construction and aerodynamic characterization.Final Published versio

Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis

BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London

Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study

Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world. Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231. Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001). Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication

Global economic burden of unmet surgical need for appendicitis

Background: There is a substantial gap in provision of adequate surgical care in many low-and middle-income countries. This study aimed to identify the economic burden of unmet surgical need for the common condition of appendicitis. Methods: Data on the incidence of appendicitis from 170 countries and two different approaches were used to estimate numbers of patients who do not receive surgery: as a fixed proportion of the total unmet surgical need per country (approach 1); and based on country income status (approach 2). Indirect costs with current levels of access and local quality, and those if quality were at the standards of high-income countries, were estimated. A human capital approach was applied, focusing on the economic burden resulting from premature death and absenteeism. Results: Excess mortality was 4185 per 100 000 cases of appendicitis using approach 1 and 3448 per 100 000 using approach 2. The economic burden of continuing current levels of access and local quality was US $92 492 million using approach 1 and$73 141 million using approach 2. The economic burden of not providing surgical care to the standards of high-income countries was $95 004 million using approach 1 and$75 666 million using approach 2. The largest share of these costs resulted from premature death (97.7 per cent) and lack of access (97.0 per cent) in contrast to lack of quality. Conclusion: For a comparatively non-complex emergency condition such as appendicitis, increasing access to care should be prioritized. Although improving quality of care should not be neglected, increasing provision of care at current standards could reduce societal costs substantially